个性化的3D血管模型对于心血管疾病患者的诊断,预后和治疗计划很有价值。传统上,这样的模型是用明确表示(例如网格和体素掩码)构建的,或隐式表示,例如径向基函数或原子(管状)形状。在这里,我们建议在可区分的隐式神经表示(INR)中以其签名距离函数(SDF)的零级集表示表面。这使我们能够用隐性,连续,轻巧且易于与深度学习算法集成的表示复杂的血管结构对复杂的血管结构进行建模。我们在这里通过三个实际示例证明了这种方法的潜力。首先,我们从CT图像中获得了腹主动脉瘤(AAA)的精确和水密表面,并显示出从表面上的200点出现的可靠拟合。其次,我们同时将嵌套的容器壁贴在一个没有交叉点的单个INR中。第三,我们展示了如何将3D模型的单个动脉模型平滑地混合到单个水密表面。我们的结果表明,INR是一种灵活的表示,具有微小互动注释和操纵复杂血管结构的潜力。
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The task of reconstructing 3D human motion has wideranging applications. The gold standard Motion capture (MoCap) systems are accurate but inaccessible to the general public due to their cost, hardware and space constraints. In contrast, monocular human mesh recovery (HMR) methods are much more accessible than MoCap as they take single-view videos as inputs. Replacing the multi-view Mo- Cap systems with a monocular HMR method would break the current barriers to collecting accurate 3D motion thus making exciting applications like motion analysis and motiondriven animation accessible to the general public. However, performance of existing HMR methods degrade when the video contains challenging and dynamic motion that is not in existing MoCap datasets used for training. This reduces its appeal as dynamic motion is frequently the target in 3D motion recovery in the aforementioned applications. Our study aims to bridge the gap between monocular HMR and multi-view MoCap systems by leveraging information shared across multiple video instances of the same action. We introduce the Neural Motion (NeMo) field. It is optimized to represent the underlying 3D motions across a set of videos of the same action. Empirically, we show that NeMo can recover 3D motion in sports using videos from the Penn Action dataset, where NeMo outperforms existing HMR methods in terms of 2D keypoint detection. To further validate NeMo using 3D metrics, we collected a small MoCap dataset mimicking actions in Penn Action,and show that NeMo achieves better 3D reconstruction compared to various baselines.
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This work builds on the models and concepts presented in part 1 to learn approximate dictionary representations of Koopman operators from data. Part I of this paper presented a methodology for arguing the subspace invariance of a Koopman dictionary. This methodology was demonstrated on the state-inclusive logistic lifting (SILL) basis. This is an affine basis augmented with conjunctive logistic functions. The SILL dictionary's nonlinear functions are homogeneous, a norm in data-driven dictionary learning of Koopman operators. In this paper, we discover that structured mixing of heterogeneous dictionary functions drawn from different classes of nonlinear functions achieve the same accuracy and dimensional scaling as the deep-learning-based deepDMD algorithm. We specifically show this by building a heterogeneous dictionary comprised of SILL functions and conjunctive radial basis functions (RBFs). This mixed dictionary achieves the same accuracy and dimensional scaling as deepDMD with an order of magnitude reduction in parameters, while maintaining geometric interpretability. These results strengthen the viability of dictionary-based Koopman models to solving high-dimensional nonlinear learning problems.
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Koopman operators model nonlinear dynamics as a linear dynamic system acting on a nonlinear function as the state. This nonstandard state is often called a Koopman observable and is usually approximated numerically by a superposition of functions drawn from a dictionary. In a widely used algorithm, Extended Dynamic Mode Decomposition, the dictionary functions are drawn from a fixed class of functions. Recently, deep learning combined with EDMD has been used to learn novel dictionary functions in an algorithm called deep dynamic mode decomposition (deepDMD). The learned representation both (1) accurately models and (2) scales well with the dimension of the original nonlinear system. In this paper we analyze the learned dictionaries from deepDMD and explore the theoretical basis for their strong performance. We explore State-Inclusive Logistic Lifting (SILL) dictionary functions to approximate Koopman observables. Error analysis of these dictionary functions show they satisfy a property of subspace approximation, which we define as uniform finite approximate closure. Our results provide a hypothesis to explain the success of deep neural networks in learning numerical approximations to Koopman operators. Part 2 of this paper will extend this explanation by demonstrating the subspace invariant of heterogeneous dictionaries and presenting a head-to-head numerical comparison of deepDMD and low-parameter heterogeneous dictionary learning.
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Electronic Health Records (EHRs) hold detailed longitudinal information about each patient's health status and general clinical history, a large portion of which is stored within the unstructured text. Temporal modelling of this medical history, which considers the sequence of events, can be used to forecast and simulate future events, estimate risk, suggest alternative diagnoses or forecast complications. While most prediction approaches use mainly structured data or a subset of single-domain forecasts and outcomes, we processed the entire free-text portion of EHRs for longitudinal modelling. We present Foresight, a novel GPT3-based pipeline that uses NER+L tools (i.e. MedCAT) to convert document text into structured, coded concepts, followed by providing probabilistic forecasts for future medical events such as disorders, medications, symptoms and interventions. Since large portions of EHR data are in text form, such an approach benefits from a granular and detailed view of a patient while introducing modest additional noise. On tests in two large UK hospitals (King's College Hospital, South London and Maudsley) and the US MIMIC-III dataset precision@10 of 0.80, 0.81 and 0.91 was achieved for forecasting the next biomedical concept. Foresight was also validated on 34 synthetic patient timelines by 5 clinicians and achieved relevancy of 97% for the top forecasted candidate disorder. Foresight can be easily trained and deployed locally as it only requires free-text data (as a minimum). As a generative model, it can simulate follow-on disorders, medications and interventions for as many steps as required. Foresight is a general-purpose model for biomedical concept modelling that can be used for real-world risk estimation, virtual trials and clinical research to study the progression of diseases, simulate interventions and counterfactuals, and for educational purposes.
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Open World Object Detection (OWOD) is a new and challenging computer vision task that bridges the gap between classic object detection (OD) benchmarks and object detection in the real world. In addition to detecting and classifying seen/labeled objects, OWOD algorithms are expected to detect novel/unknown objects - which can be classified and incrementally learned. In standard OD, object proposals not overlapping with a labeled object are automatically classified as background. Therefore, simply applying OD methods to OWOD fails as unknown objects would be predicted as background. The challenge of detecting unknown objects stems from the lack of supervision in distinguishing unknown objects and background object proposals. Previous OWOD methods have attempted to overcome this issue by generating supervision using pseudo-labeling - however, unknown object detection has remained low. Probabilistic/generative models may provide a solution for this challenge. Herein, we introduce a novel probabilistic framework for objectness estimation, where we alternate between probability distribution estimation and objectness likelihood maximization of known objects in the embedded feature space - ultimately allowing us to estimate the objectness probability of different proposals. The resulting Probabilistic Objectness transformer-based open-world detector, PROB, integrates our framework into traditional object detection models, adapting them for the open-world setting. Comprehensive experiments on OWOD benchmarks show that PROB outperforms all existing OWOD methods in both unknown object detection ($\sim 2\times$ unknown recall) and known object detection ($\sim 10\%$ mAP). Our code will be made available upon publication at https://github.com/orrzohar/PROB.
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Although lyrics generation has achieved significant progress in recent years, it has limited practical applications because the generated lyrics cannot be performed without composing compatible melodies. In this work, we bridge this practical gap by proposing a song rewriting system which rewrites the lyrics of an existing song such that the generated lyrics are compatible with the rhythm of the existing melody and thus singable. In particular, we propose SongRewriter, a controllable Chinese lyric generation and editing system which assists users without prior knowledge of melody composition. The system is trained by a randomized multi-level masking strategy which produces a unified model for generating entirely new lyrics or editing a few fragments. To improve the controllabiliy of the generation process, we further incorporate a keyword prompt to control the lexical choices of the content and propose novel decoding constraints and a vowel modeling task to enable flexible end and internal rhyme schemes. While prior rhyming metrics are mainly for rap lyrics, we propose three novel rhyming evaluation metrics for song lyrics. Both automatic and human evaluations show that the proposed model performs better than the state-of-the-art models in both contents and rhyming quality. Our code and models implemented in MindSpore Lite tool will be available.
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The 1$^{\text{st}}$ Workshop on Maritime Computer Vision (MaCVi) 2023 focused on maritime computer vision for Unmanned Aerial Vehicles (UAV) and Unmanned Surface Vehicle (USV), and organized several subchallenges in this domain: (i) UAV-based Maritime Object Detection, (ii) UAV-based Maritime Object Tracking, (iii) USV-based Maritime Obstacle Segmentation and (iv) USV-based Maritime Obstacle Detection. The subchallenges were based on the SeaDronesSee and MODS benchmarks. This report summarizes the main findings of the individual subchallenges and introduces a new benchmark, called SeaDronesSee Object Detection v2, which extends the previous benchmark by including more classes and footage. We provide statistical and qualitative analyses, and assess trends in the best-performing methodologies of over 130 submissions. The methods are summarized in the appendix. The datasets, evaluation code and the leaderboard are publicly available at https://seadronessee.cs.uni-tuebingen.de/macvi.
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组蛋白修饰在基因调节中起关键作用。因此,从组蛋白修饰信号中预测基因表达是表观遗传学中的一个高度动机问题。我们基于Singh等人的Deepchrome的作品。 (2016年),他训练了将组蛋白修饰信号映射到基因表达的分类器。我们提出了一种新颖的可视化技术,以提供有关基因调节组蛋白修饰之间的组合关系的见解,该基因调节使用生成性对抗网络来生成组蛋白修饰信号。我们还探索和比较了各种架构变化,结果表明,来自DeepChrome的645K参数卷积神经网络具有与12参数线性网络相同的预测能力。跨细胞预测实验的结果,该模型在不同大小,细胞类型和相关性的数据集上进行了训练和测试,这表明组蛋白修饰信号与基因表达之间的关系与细胞类型无关。我们在github \ footNote上释放deepchrome的pytorch重新实现{\ url {github.com/ssssssss1029/gene_expression_294}}。\ parfillskip = 0pt = 0pt
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对异常域特定视频集的有效分析是一个重要的实践问题,在该问题中,最新的通用模型仍面临局限性。因此,希望设计基准数据集,以挑战具有其他约束的特定领域的新型强大模型。重要的是要记住,特定域的数据可能更嘈杂(例如,内窥镜或水下视频),并且通常需要更多经验丰富的用户才能有效搜索。在本文中,我们专注于从水下环境中移动相机拍摄的单次视频,这构成了研究目的的非平凡挑战。提出了新的海洋视频套件数据集的第一个碎片,用于用于视频检索和其他计算机视觉挑战。除了基本的元数据统计数据外,我们还基于低级特征以及所选密钥帧的语义注释提供了几个见解和参考图。该分析还包含实验,显示了检索受人尊敬的通用模型的局限性。
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